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1

The Effect of H 3 O + on the Structure and Dynamics of Water at the Interface with Phospholipid Bilayers

Deplazes, Evelyne, Sarrami, Farzaneh, Poger, David

Journal:

Journal of Physical Chemistry B

Année:

2020

Langue:

english

Fichier:

PDF, 2.64 MB

english, 2020

2

Molecular dynamics simulation of the interaction of small molecules with biological membranes

Martinotti, Carlo, Ruiz-Perez, Lanie, Deplazes, Evelyne, Mancera, Ricardo L

Journal:

Année:

2020

Fichier:

PDF, 3.87 MB

2020

3

Structural Investigation of MscL Gating Using Experimental Data and Coarse Grained MD Simulations

Deplazes, Evelyne, Louhivuori, Martti, Jayatilaka, Dylan, Marrink, Siewert J., Corry, Ben, Elofsson, Arne

Journal:

PLoS Computational Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2012

4

Molecular dynamics and functional studies define a hot spot of crystal contacts essential for PcTx1 inhibition of acid-sensing ion channel 1a

Saez, Natalie J, Deplazes, Evelyne, Cristofori-Armstrong, Ben, Chassagnon, Irène R, Lin, Xiaozhen, Mobli, Mehdi, Mark, Alan E, Rash, Lachlan D, King, Glenn F

Journal:

British Journal of Pharmacology

Année:

2015

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2015

5

Revisiting the Interaction of Melittin with Phospholipid Bilayers: The Effects of Concentration and Ionic Strength

Sabapathy, Thiru, Deplazes, Evelyne, Mancera, Ricardo L.

Journal:

International Journal of Molecular Sciences

Année:

2020

Langue:

english

Fichier:

PDF, 3.25 MB

english, 2020

6

Clustering of the Mechanosensitive Ion Channels of Large and Small Conductance MscL and MscS - a FRET-Flim Study

Cranfield, Charles G., Deplazes, Evelyne, MacMillan, Alex, Owen, Dylan, Nomura, Takeshi, Constantine, Maryrose, Corry, Ben, Martinac, Boris

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 46 KB

english, 2012

7

A Model of the Open Pore MscL Based on Experimental Data and Restrained Coarse Grained Simulations

Deplazes, Evelyne, Jayatilaka, Dylan, Louhivuori, Martti, Marrink, Siewert-Jan, Corry, Ben

Journal:

Biophysical Journal

Année:

2012

Langue:

english

Fichier:

PDF, 55 KB

english, 2012

8

Bacterial Mechanosensitive Channels: Models for Studying Mechanosensory Transduction

Martinac, Boris, Nomura, Takeshi, Chi, Gamma, Petrov, Evgeny, Rohde, Paul R., Battle, Andrew R., Foo, Alexander, Constantine, Maryrose, Rothnagel, Rosalba, Carne, Sonia, Deplazes, Evelyne, Cornell, Br

Journal:

Antioxidants & Redox Signaling

Année:

2014

Langue:

english

Fichier:

PDF, 2.32 MB

english, 2014

9

Resolutions of the Coulomb operator

Varganov, Sergey A., Gilbert, Andrew T. B., Deplazes, Evelyne, Gill, Peter M. W.

Journal:

The Journal of Chemical Physics

Année:

2008

Langue:

english

Fichier:

PDF, 359 KB

english, 2008

10

Modeling of the Open-Channel Structure of Mscl Using Restrained Simulations

Deplazes, Evelyne, Louhivuori, Martti, Marrink, Siewert J., Corry, Ben

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 116 KB

english, 2011

11

Interpreting FRET in Complex Geometries

Corry, Ben, Deplazes, Evelyne, Jayatilaka, Dylan

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 38 KB

english, 2010

12

Determination of Fluorophore Orientation and Energy Transfer from MD Simulations

Deplazes, Evelyne, Corry, Ben, Jayatilaka, Dylan

Journal:

Biophysical Journal

Année:

2010

Langue:

english

Fichier:

PDF, 40 KB

english, 2010

13

Testing the use of molecular dynamics to simulate fluorophore motions and FRET

Deplazes, Evelyne, Jayatilaka, Dylan, Corry, Ben

Journal:

Physical Chemistry Chemical Physics

Année:

2011

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2011

14

ExiFRET: flexible tool for understanding FRET in complex geometries

Deplazes, Evelyne, Jayatilaka, Dylan, Corry, Ben

Journal:

Journal of Biomedical Optics

Année:

2012

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2012

15

Comparing the Ability of Enhanced Sampling Molecular Dynamics Methods To Reproduce the Behavior of Fluorescent Labels on Proteins

Walczewska-Szewc, Katarzyna, Deplazes, Evelyne, Corry, Ben

Journal:

Journal of Chemical Theory and Computation

Année:

2015

Langue:

english

Fichier:

PDF, 4.29 MB

english, 2015

16

Widespread convergence in toxin resistance by predictable molecular evolution

Ujvari, Beata, Casewell, Nicholas R., Sunagar, Kartik, Arbuckle, Kevin, Wüster, Wolfgang, Lo, Nathan, O’Meally, Denis, Beckmann, Christa, King, Glenn F., Deplazes, Evelyne, Madsen, Thomas

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2015

17

Characterizing the conformational dynamics of metal-free PsaA using molecular dynamics simulations and electron paramagnetic resonance spectroscopy

Deplazes, Evelyne, Begg, Stephanie L., van Wonderen, Jessica H., Campbell, Rebecca, Kobe, Bostjan, Paton, James C., MacMillan, Fraser, McDevitt, Christopher A., O'Mara, Megan L.

Journal:

Biophysical Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2015

18

Combination of Ambiguous and Unambiguous Data in the Restraint-driven Docking of Flexible Peptides with HADDOCK: The Binding of the Spider Toxin PcTx1 to the Acid Sensing Ion Channel (ASIC) 1a

Deplazes, Evelyne, Davies, Josephine, Bonvin, Alexandre M. J. J., King, Glenn F., Mark, Alan E.

Journal:

Journal of Chemical Information and Modeling

Année:

2015

Langue:

english

Fichier:

PDF, 3.60 MB

english, 2015

19

Membrane-binding properties of gating modifier and pore-blocking toxins: Membrane interaction is not a prerequisite for modification of channel gating

Deplazes, Evelyne, Henriques, Sónia Troeira, Smith, Jennifer J., King, Glenn F., Craik, David J., Mark, Alan E., Schroeder, Christina I.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Année:

2016

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2016

20

On the Combination of Restraint-Driven Docking of Flexible Peptides to Ion Channels - Lessons Learnt from the Complex Formed by the Spider Venom PcTx1 and the Acid Sensing Ion Channel1

Deplazes, Evelyne, Davies, Josephine, Bonvin, Alexandre M.J.J., Mark, Alan E.

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 41 KB

english, 2016

21

Membrane-Binding Properties of Gating-Modifier and Pore Blocking Toxins: Membrane Interaction is not a Prerequisite for Modification of Channel Gating

Deplazes, Evelyne, Troeira Henriques, Sónia, King, Glenn F., Craik, David J., Mark, Alan E., Schroeder, Christina I.

Journal:

Biophysical Journal

Année:

2016

Langue:

english

Fichier:

PDF, 45 KB

english, 2016

22

Interaction of Tarantula Venom Peptide ProTx-II with Lipid Membranes is a Prerequisite for its Inhibition of Human Voltage-gated Sodium Channel NaV1.7

Henriques, Sónia Troeira, Deplazes, Evelyne, Lawrence, Nicole, Cheneval, Olivier, Chaousis, Stephanie, Inserra, Marco, Thongyoo, Panumart, King, Glenn F., Mark, Alan E., Vetter, Irina, Craik, David J.

Journal:

Journal of Biological Chemistry

Année:

2016

Langue:

english

Fichier:

PDF, 4.30 MB

english, 2016

23

Spider peptide toxin HwTx-IV engineered to bind to lipid membranes has an increased inhibitory potency at human voltage-gated sodium channel hNa V 1.7

Agwa, Akello J., Lawrence, Nicole, Deplazes, Evelyne, Cheneval, Olivier, Chen, Rachel M., Craik, David J., Schroeder, Christina I., Henriques, Sónia T.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Année:

2017

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2017

24

The Importance of Peptide-Membrane Interactions in Toxin Inhibitions of Sodium Channels

Schroeder, Christina I., Deplazes, Evelyn, Lawrence, Nicole, Agwa, Akello, Henriques, Sonia T.

Journal:

Biophysical Journal

Année:

2017

Langue:

english

Fichier:

PDF, 43 KB

english, 2017

25

Corrigendum to “Spider peptide toxin HwTx-IV engineered to bind to lipid membranes has an increased inhibitory potency at human voltage-gated sodium channel hNa V 1.7” [Biochim. Biophys. Acta 1859(5) (2017) 835–844]

Agwa, Akello J., Lawrence, Nicole, Deplazes, Evelyne, Cheneval, Olivier, Chen, Rachel M., Craik, David J., Schroeder, Christina I., Henriques, Sónia T.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Année:

2017

Langue:

english

Fichier:

PDF, 186 KB

english, 2017

26

The effect of hydronium ions on the structure of phospholipid membranes

Deplazes, Evelyne, Poger, David, Cornell, Bruce, Cranfield, Charles G.

Journal:

Physical Chemistry Chemical Physics

Année:

2018

Langue:

english

Fichier:

PDF, 3.44 MB

english, 2018

27

Gomesin peptides prevent proliferation and lead to the cell death of devil facial tumour disease cells

Fernandez-Rojo, Manuel A., Deplazes, Evelyne, Pineda, Sandy S., Brust, Andreas, Marth, Tano, Wilhelm, Patrick, Martel, Nick, Ramm, Grant A., Mancera, Ricardo L., Alewood, Paul F., Woods, Gregory M., B

Journal:

Cell Death Discovery

Année:

2018

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2018

28

Molecular simulations of venom peptide-membrane interactions: Progress and challenges

Deplazes, Evelyne

Journal:

Peptide Science

Année:

2018

Langue:

english

Fichier:

PDF, 801 KB

english, 2018

29

Molecular Simulations of Disulfide-Rich Venom Peptides with Ion Channels and Membranes

Deplazes, Evelyne

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2017

30

Characterisation of the Structure and Oligomerisation of Islet Amyloid Polypeptides (IAPP): A Review of Molecular Dynamics Simulation Studies

Moore, Sandra, Sonar, Krushna, Bharadwaj, Prashant, Deplazes, Evelyne, Mancera, Ricardo

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 8.98 MB

english, 2018

31

The effect of H3O+ on the membrane morphology and hydrogen bonding of a phospholipid bilayer

Deplazes, Evelyne, Poger, David, Cornell, Bruce, Cranfield, Charles G.

Journal:

Biophysical Reviews

Année:

2018

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2018

32

The Biological and Biophysical Properties of the Spider Peptide Gomesin

Tanner, John, Deplazes, Evelyne, Mancera, Ricardo

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 3.12 MB

english, 2018

33

Competing for the same space: protons and alkali ions at the interface of phospholipid bilayers

Deplazes, Evelyne, White, Jacqueline, Murphy, Christopher, Cranfield, Charles G, Garcia, Alvaro

Journal:

Biophysical Reviews

Année:

2019

Fichier:

PDF, 630 KB

2019

34

The Role of Ion-Phospholipid Interactions in Zwitterionic Phospholipid Bilayer Ion Permeation

Deplazes, Evelyne, Domingo Tafalla, Beatriu, Cranfield, Charles G., Garcia, Alvaro

Journal:

The Journal of Physical Chemistry Letters

Année:

2020

Fichier:

PDF, 850 KB

2020

35

Label-Free, Real-Time Phospholipase-A Isoform Assay

Garcia, Alvaro, Deplazes, Evelyne, Aili, Samira, Padula, Matthew P., Touchard, Axel, Murphy, Christopher, Mirissa Lankage, Upeksha, Nicholson, Graham M., Cornell, Bruce, Cranfield, Charles G.

Journal:

ACS Biomaterials Science & Engineering

Année:

2020

Fichier:

PDF, 3.08 MB

2020

36

Structural Characterisation of a Cation-Selective, Self-Assembled Peptide Pore in Planar Phospholipid Bilayers

Deplazes, Evelyne, Hartmann, Lissy, Cranfield, Charles G., Garcia, Alvaro

Journal:

The Journal of Physical Chemistry Letters

Année:

2020

Fichier:

PDF, 3.18 MB

2020

37

Design, Synthesis and Biological Evaluation of Biphenylglyoxamide-Based Small Molecular Antimicrobial Peptide Mimics as Antibacterial Agents

Yu, Tsz Tin, Kuppusamy, Rajesh, Yasir, Muhammad, Hassan, Md. Musfizur, Alghalayini, Amani, Gadde, Satyanarayana, Deplazes, Evelyne, Cranfield, Charles, Willcox, Mark D.P., Black, David StC, Kumar, Nar

Journal:

International Journal of Molecular Sciences

Année:

2020

Fichier:

PDF, 1.13 MB

2020

38

The Role of Structure and Biophysical Properties in the Pleiotropic Effects of Statins

Murphy, Christopher, Deplazes, Evelyne, Cranfield, Charles G., Garcia, Alvaro

Journal:

International Journal of Molecular Sciences

Année:

2020

Fichier:

PDF, 3.09 MB

2020